PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28137.2 Da    PI: 9.5633
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57890.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61e-30959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  MLOC_57890.1  9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                  79***********************************************95 PP

2K-box95.39.8e-328517510100
         K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   e + ++++qqe ak++ +i++Lq++++hl+G+++++LslkeL+qLe++Lek++ kiR++Knell  +i+++ k+e elq++n +Lr+k++e
  MLOC_57890.1  85 EVNAQQYYQQETAKMRHQIQMLQNTNKHLVGDSVGNLSLKELKQLESRLEKGIAKIRARKNELLSCEINYMVKREIELQSDNIDLRTKIAE 175
                   567789**********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002651.11E-44274No hitNo description
SuperFamilySSF554551.57E-32275IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-323859IPR002100Transcription factor, MADS-box
PfamPF014869.3E-2486173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.10189179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048283Biological Processindeterminate inflorescence morphogenesis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
SVKATIERYK KAHACGSTSG APLIEVNAQQ YYQQETAKMR HQIQMLQNTN KHLVGDSVGN  120
LSLKELKQLE SRLEKGIAKI RARKNELLSC EINYMVKREI ELQSDNIDLR TKIAEGEQQL  180
QKVTIARPSA APELNPFTAL DMKCFFPANL FEAAVHAHAQ AQAHAQAQAS LQLNLGCQQL  240
APPGAGDGAH QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S2e-19169169Myocyte-specific enhancer factor 2B
1tqe_R2e-19169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-19169169Myocyte-specific enhancer factor 2B
1tqe_P2e-19169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749710.0AK374971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578791.11e-158PREDICTED: uncharacterized protein LOC100836399 isoform X2
SwissprotQ2QW531e-133MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBLF2EFP50.0F2EFP5_HORVD; Predicted protein
STRINGMLOC_57890.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.14e-85MIKC_MADS family protein